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2010 Publication List

Publications Using Results Obtained With Imaris

Peer reviewed publications between 1990 and 2010 that are using Imaris in one of its configurations. If you know of any paper that is missing on this list please report it to publications@bitplane.com.

August

TitleJournalAuthorResearchCategoryArticle
The dissection of transcriptional modules regulated by various drugs of abuse in the mouse striatum Genome Biol. Piechota M., Korostynski M.et al. Neuropharma. Visualization     Filament Tracer Abstract
Recurrent Spontaneous Spreading Depolarizations Facilitate Acute Dendritic Injury in the Ischemic Penumbra J. Neurosci.,  30: 9859 - 9868 Richer W.C., Ard D.,et al. Neuroscience Visiualization  AutoAligner Abstract
Increased Expression of 6 Integrin in Endothelial Cells Unveils a Proangiogenic Role for Basement Membrane Cancer Res., 70: 5759 - 5769 Primo L., Seano G. et al. Cancer Research 3D Visiualization Abstract
SH3TC2, a protein mutant in Charcot–Marie–Tooth neuropathy, links peripheral nerve myelination to endosomal recycling Brain, 133: 2462 - 2474 Stendel C., Roos A., et al. Cell Biology Visualization     Abstract
Differential distribution of tight junction proteins suggests a role for tanycytes in blood-hypothalamus barrier regulation in the adult mouse brain J Comp Neurol., 518(7): 943–962 Mullier A., Bouret S,G., et al. Neuroscience 3D Visualiation Abstract
Matriptase initiates activation of epidermal pro-kallikrein and disease onset in a mouse model of Netherton syndrome Nature Genetics 42: 676-683 Sales K.U., Masedunskas A. et al. Genetics Visualization   Abstract
Role of type 1 and type 3 fimbriae in Klebsiella pneumoniae biofilm formation BMC Microbiol. Schroll C., Barken K.B., et al. Biomedical Microbiology 3D Visualiation Absrtact
The Role of Spatially Controlled Cell Proliferation in Limb Bud Morphogenesis  PLoS Biol. Boehm B., Westerberg H., et al. Genetics 3D Visualization Abstract
Matrix Metalloproteinases Are Modifiers of Huntingtin Proteolysis and Toxicity in Huntington's Disease Neuron,  67(2): 199-212 Miller J.P., Bouret S.G., et al. Neuroscience Visualization MeasurementPro    Abstract
Virally infected and matured human dendritic cells activate natural killer cells via cooperative activity of plasma membrane-bound TNF and IL-15 Blood, 116(4): 575 - 583 Vujanovic L., Szymkowski D.E, et al.
 Immunobiology Visualiation            Abstract

Additional 33 Publications

July

TitleJournalAuthorResearchCategoryArticle
Blocking Early GABA Depolarization with Bumetanide Results in Permanent Alterations in Cortical Circuits and Sensorimotor Gating Deficits Cereb Cortex Wang D.D. and A.R. Kriegstein Stem Cell Research Visualization   MeasurementPro  Filament Tracer Abstract
Continuous Neural Plasticity in the Olfactory Intrabulbar Circuitry J. Neurosci.,  30(27): 9127 Cummings D.M. and Belluscio L. Neurobiology Visiualization  Filament Tracer Abstract
F-actin-binding domain of c-Abl regulates localized phosphorylation of C3G: role of C3G in c-Abl-mediated cell death Oncogene Mitra A. and Radha V. Cancer Research Visiualization Abstract
Enhanced hepatitis C virus genome replication and lipid accumulation mediated by inhibition of AMP-activated protein kinase PNAS, 107: 11549 - 11554 Mankouri J., Tedbury, P.R., et al. Cell Biology Visualization   MeasurementPro  Abstract
Ablation of the Kinase NDR1 Predisposes Mice to the Development of T Cell Lymphoma Sci. Signal. 3 Cornils H., Stegert M.R., et al. Cancer Research 3D Visualiation Coloc Abstract
Effects of acute in vitro exposure of murine precision-cut lung slices to gaseous nitrogen dioxide and ozone in an air–liquid interface (ALI) culture Toxicology Letters, 196(2): 117-124 Switalla S., Knebel J., et al., Toxicology Visualization MeasurementPro  Abstract
T Cell and APC Dynamics In Situ Control the Outcome of Vaccination J. Immunol.,  185: 239- 252 Khanna K.M., Blair D.A., et al. Immunobiology 3D-Visualiation Coloc Absrtact
Visualizing extravasation dynamics of metastatic tumor cells J. Cell Sci., 123: 2332 -2341 Stoletov K., Kato H., et al. Cancer Research 3D Visualization Tracking  Abstract
Developmental alterations in olivary climbing fiber distribution following postnatal ethanol exposure in the rat Neuroscience. Pierce D.R., Hayar A.,et al. Developmental Biology  Visualization MeasurementPro    Coloc  Abstract
A Novel Population of Myeloid Cells Responding to Coxsackievirus Infection Assists in the Dissemination of Virus within the Neonatal CNS J. Neurosci.,  30: p. 8676 - 8691
Tabor-Godwin J.M., Ruller C.M., et al.		 Neuroscience Visualiation            Abstract

Additional 23 Publications

June

TitleJournalAuthorResearchCategoryArticle
Drosophila Neuroligin 1 Promotes Growth and Postsynaptic Differentiation at Glutamatergic Neuromuscular Junctions Neuron, 66(5) 724-738 Banovic D., Khorramshahi O., et al. Neuroscience Visualization   MeasurementPro Abstract
In situ visualization and dynamics of newly synthesized proteins in rat hippocampal neurons Nature Neuroscience Dieterich D.C., Hodas J. J. L., et al. Neurobiology Visiualization MeasurementPro Abstract
Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation Genes & Dev., 24: 1119-1132  Earley K.W., Pontvianne F., et al Developmental Biology Visiualization Abstract
High-efficiency transfection of cultured primary motor neurons to study protein localization, trafficking, and function Mol Neurodegener, 5(17) Fallini C., Bassell G.J., and Rossoll W. Cell Biology Visualization   MeasurementPro  Abstract
Shank-interacting protein–like 1 promotes tumorigenesis via PTEN inhibition in human tumor cells J Clin Invest. 120(6): 2094-2108 He L., Ingram A., et al. Nephrology Cancer Research 3D Visualiation Coloc Abstract
Glucose-Dependent Insulinotropic Polypeptide Is Expressed in Pancreatic Islet a-Cells and Promotes Insulin Secretion Gastroenterol. 138: 1965-1975 Fujita Y., Wideman R.D.,et al. Cellular Medicine Visualization Abstract
The Skin Cancer Chemotherapeutic Agent Ingenol-3-Angelate (PEP005) Is a Substrate for the Epidermal Multidrug Transporter (ABCB1) and Targets Tumor, Vasculature Cancer Res, 70(11): 4509-4519 Li L., Shukla S., et al. Cancer Research 3D Visualiation  Abstract
Mesoderm migration in Drosophila is a multi-step process requiring FGF signaling and integrin activity Development, 137: 2167-2175 McMahon A., Reeves G.T., et al. Developmental Biology  Visualization Tracking              ImarisXT Abstract
A toxicological evaluation of inhaled solid lipid nanoparticles used as a potential drug delivery system for the lung Euro. J. Pharm. Biopharm. 75(2): 107-116 Nassimi M., Schleh C., et al. Toxicology Visualization MeasurementPro  Abstract
Constitutively Active Lck Kinase in T Cells Drives Antigen Receptor Signal Transduction Immunity Nika K., Soldani C., et al. Immunobiology 3D-Visualiation Coloc Absrtact
PI3K-, actin- and microtubule-dependent transport of Semliki Forest virus replication complexes from the plasma membrane to modified lysosomes J. Virol. Spuul P., Balistreri G., et al.  Biotechnology Visualization Tracking  Abstract
Light-mediated activation reveals a key role for Rac in collective guidance of cell movement in vivo Nature Cell Biology 12: 591-597 Wang X., He L., et al. Cell Biology Visualization MeasurementPro  Abstract
Termination of autophagy and reformation of lysosomes regulated by mTOR Nature, 465, 942-946 Yu L., MCPhee C.K., et al. Immunology Visualiation            Coloc  Abstract

Additional 24 Publications

  May

TitleJournalAuthorResearchCategoryArticle
A Perisynaptic Ménage à Trois between Dlg, DLin-7, and Metro Controls Proper Organization of Drosophila Synaptic Junctions J. Neurosci.,  30: 5811 - 5824 Bachmann and Kobler et al. Neuroscience Visualization   MeasurementPro Abstract
The life of an mRNA in space and time J. Cell Sci.,  123: 1761-1774 Ben-Ari Y., et al. Cell Biology Visiualization Tracking Abstract
Cardiac remodelling as a result of pre-term birth: implications for future cardiovascular disease Eur. Heart J. Bensley J.G., et al. Developmental Biology Visualization MeasurementPro   Abstract
Interaction of biodegradable nanoparticles with intestinal cells: The effect of surface hydrophilicity Int.  J. Pharm.,  390(1): 45-52 Gaumet  M., et al. Pharmaceutical Nanotechnology 3D Visualiation Abstract
Selective Condensation Drives Partitioning and Sequential Secretion of Cyst Wall Proteins in Differentiating Giardia lamblia PLoS Pathog,  6(4) Konrad C., et al. Parasitology Visualization Cloloc   Abstract
Regulation of thymocyte positive selection and motility by GIT2 Nature Immunology Phee H., et al. Immunology Visualization Tracking  Abstract
S Phase Progression in Human Cells Is Dictated by the Genetic Continuity of DNA Foci PLoS Genet, 6(4) Maya-Mendoza A., et al. Genetics Visualization MeasurementPro  Abstract
Anchor Cell Invasion in Caenorhabditis elegans: A Genetic and Cell Biological Model for Experimentally Dissecting Cell Invasion through Basement Membrane In vivo Am. Assoc. Cancer Res. Educ. 167 - 175 Sherwood D.R. Cancer research Visualization Tracking  Abstract
The spatial dynamics of tissue-specific promoters during C. elegans development Genes & Dev., 24: 766-782 Meister P., et al. Developmental Biology  Visualiation  Abstract
The effects of hyaluronic acid hydrogels with tunable mechanical properties on neural progenitor cell differentiation Biomaterials,  31: 3930-3940 Seidlits S.K., et al. Biomedical Engineering Visualization   Abstract

Additional 30 Publications

April  

TitleJournalAuthorResearchCategoryArticle
Cytosolic action of phytochelatin synthase Plant Physiology Blum R., Meyer K.C., et al. Cell Biology Visualization Abstract
Regulation of Developmental Lymphangiogenesis by Syk+ Leukocyte Developmental Cell, 18 (3), 437-449 Böhmer R., Neuhaus B., et al. Developmental Biology  Visualization Abstract
A Protease-Dependent Mechanism for Initiating T-Dependent B Cell Responses to Large Particulate Antigen J. Immunol. 184, 3609 -3617 Catron D.M., Pape K.A., et al. Immunology Visiualization Tracking Abstract
Free HTLV-1 induces TLR7-dependent innate immune response and TRAIL relocalization in killer plasmacytoid dendritic cells Blood,  115: 2177 - 2185 Colisson R., Barblu L., et al. Immunology  Visualization MeasurementPro   Abstract
Hyperpolarization-activated and cyclic nucleotide-gated channels are differentially expressed injuxtaglomerular cells in the olfactory bulb of mice Cell Tissue Res., 339(3): 463-479 Fried H.U., KauppU.B., and Müller F. Stuctural Biology 3D Visualiation Abstract
Kinetochore alignment within the metaphase plateis regulated by centromere stiffness and microtubule depolymerases J. Cell Biol., 188 (5): 665 - 679 Jaqaman K., King E.M , et al. Cell Biology Visiualization Imaris XT Abstract
Polypyrimidine Tract Binding Protein Functions as a Negative Regulator of Feline Calicivirus Translation PloS One, 5(3) Karakasiliotis I., Vashist S., et al. Virology Visualization  Abstract
Carbohydrate Oxidation Acidifies Endosomes, Regulating Antigen Processing and TLR9 Signaling J. Immunol., 184, 3789-3800 Lewis C.J. and Cobb B.A. Immunology  Visualization Cloloc   Abstract
The Mouse Cornea as a Transplantation Site for Live Imaging of Engineered Tissue Constructs Cold Spring Harb Protocols Poché R.A., Saik J.E., et al. Tissue Engineering Visualization Tracking  Abstract
A Common Progenitor for Retinal Astrocytes and Oligodendrocytes J. Neurosci,  30: 4970-4980 Rompani S.B. and Cepko C. L. Neuroscience  Visualization MeasurementPro  Abstract
Perinuclear P granules are the principal sites of mRNA export in adult C. elegans germ cells Development, 137, 1305-1314 Sheth U., Pitt J., et al. Developmental Biology  Visualization Tracking  Abstract
Epigenetic stability increases extensively during Drosophila follicle stem cell differentiation PNAS Skora A.D. and Spradling A.C. Genetics  3D Visualiation  Abstract
Coilin-dependent snRNP assembly is essential for zebrafish embryogenesis Nature Structural & Mol. Biology 17: 403-409 Strzelecka M., Trowitzsch S., et al. Cell Biology Visualization MeasurementPro  Abstract

Additional 29 Publications

March

TitleJournalAuthorResearchCategoryArticle
Agrobacterium type IV secretion system and its substrates form helical arrays around the circumference of virulence-induced cells  PNAS, 107: 3758 - 3763 Aguilar J., Zupan J., et al. Microbiology Visualization Colocalization Absrtact
Scyl1 Regulates Golgi Morphology PLoS One Burman J.L., Hamlin J.N.R., et al. Neurobiology Visualization Abstract
The Angelman Syndrome Protein Ube3A Regulates Synapse Development by Ubiquitinating Arc Cell, 140(5): 704-716 Greer P.L., Hanayama R., et a. Neurobiology Visualization  Abstract
Neurogenic radial glia in the outer subventricular zone of human neocortex Nature  Hansen D.V., Lui J.H., et al. Neurobiology  Visualization  Absrtact
Neurodevelopmental effects of chronic exposure to elevated levels of pro-inflammatory cytokines in a developing visual system Neural Dev.,  5(2) Lee R. H., Mills E.A., et al. Neuroscience 3D-Tracking Abstract
Optineurin Negatively Regulates the Induction of IFNβ in Response to RNA Virus Infection PLoS Pathog. Mankouri J., Fragkoudis R., et al. Cell Biology 3D-Visualization Colocalization Abstract
High frequency, cell type-specific visualization of fluorescent-tagged genomic sites in interphase and mitotic cells of living Arabidopsis plants Plant Methods, 6(2) Matzke A.J.M., Watanabe K., et al.  Plant Biology Tracking Visualization Imaris XT Abstract
Regulation of endocytic trafficking of transferrin receptor by optineurin and its impairment by a glaucoma-associated mutant BMC Cell Biol.,  11(4)  Nagabhushana A., Chalasani M.L.,et al. Cell Biology  Visualization MeasurmentPro Abstract
Forgetting Is Regulated through Rac Activity in Drosophila  Cell, 140(4): 579 - 589 Shuai Y., Lu B., et al. Cell Biology  3D-Visualization  Abstract
Genetic and dietary regulation of lipid droplet expansion in Caenorhabditis elegans  PNAS Zhang S.O., Box A.C., et al Genetics Visualization MeasurmentPro  Abstract
   Additional 30 Publications

February

 

TitleJournalAuthorResearchCategoryArticle
Exploring the effects of mechanical feedback on epithelial topology Development,  137: 499 - 506 Aegerter-Wilmsen T., et al. Developmental Biology 3D-Visualization Measurements Abstract
Diversity and wiring variability of olfactory local interneurons in the Drosophila antennal lobe  Nature Neuroscience Chou Y.H., et al. Neuroscience Filament tracer Measurment Visualization Absrtact
T Cell–Dendritic Cell Interaction Dynamics during the Induction of Respiratory Tolerance and Immunity J. Immunol.,  184: 1317 - 1327 Bakocevic N., et al. Immunology 3D-Visualization Tracking Measurements Abstract
Ancient animal microRNAs and the evolution of tissue identity Nature Christodoulou F., et al. Developmental Biology 3D-Visualization Absrtact
Alternative splicing produces high levels of noncoding isoforms of bHLH transcription factors during development Genes & Dev., 24: 229 - 234,
Kanadia R.N. and Cepko C. L. Genetics 3D-Visualization  Abstract
Embryo and Endosperm Inherit Distinct Chromatin and Transcriptional States from the Female Gametes in Arabidopsis Plant Cell Pillot M., et al. Plant Biology 3D-Visualization  Abstract
Munc18/Syntaxin Interaction Kinetics Control Secretory Vesicle Dynamic J. Biol. Chem., 285: 3965 - 397 Rickman C. and Duncan R.R. Biological Chemistry Tracking Abstract
From Dynamic Live Cell Imaging to 3D Ultrastructure: Novel Integrated Methods for High Pressure Freezing and Correlative Light-Electron Microscopy PLoS One Spiegelhalter C., et al. Cell Biology 3D-Visualization Abstract

Additional 20 Publications

January

TitleJournalAuthorResearchCategoryArticle
Murine hippocampal neurons expressing Fmr1 gene premutations show early developmental deficits and late degeneration Hum. Mol. Genet. 19: 196 -208 Chen Y., Tassone F., et al. Molecular Biosciences Filament Tracer Abstract
Beneficial effects of secretory leukocyte protease inhibitor after spinal cord injury Brain 133: 12-13 Ghasemlou N., Bouhy D., et al Neuroscience 3D-Visualization Abstract
Movement Directionality in Collective Migration of Germ Layer Progenitors Current Biology Arboleda-Estudillo Y., Krieg M., et al. Cell Biology Tracking Absract
Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum Nature Biotechnology Hu G., Cabrera A., et al Genetics 3D-Visualization Abstract
Pincher-generated Nogo-A endosomes mediate growth cone collapse and retrograde signaling J. Cell Biol. Joset A., Dodd D. A., et al. Cell Biology Colocalization Abstract
Biofilm-like extracellular viral assemblies mediate HTLV-1 cell-to-cell transmission at virological synapses Nature Medicine 16: 83-89 Pais-Correia A.M., Sachse M., et al Cell Biology Visualization Abstract
Insulin Causes Hyperthermia by Direct Inhibition of Warm-Sensitive Neuron Diabetes 59: 43-50 Sanchez-Alavez M., Tabarean I.V., et al Endocrinology Visualization Abstract
miRNA-processing enzyme Dicer is necessary for cardiac outflow tract alignment and chamber septation PNAS 107: 87-91 Saxena A., Tabin C. J. Developmental Biology Vizualization Measurement Abstract
Ciliary neurotrophic factor-induced sprouting preserves motor function in a mouse model of mild spinal muscular atrophy Hum. Mol. Genet Simon C.M., Jablonka S., et al Neuroscience Visualization Abstract
Neuropilin-2 mediates VEGF-C–induced lymphatic sprouting together with VEGFR3 J. Cell Biol. 188: 115-130  Xu Y., Yuan L., et al. Cell Biology Visualization Abstract
Transcriptional coactivator HCF-1 couples the histone chaperone Asf1b to HSV-1 DNA replication component PNAS Peng H., Nogueira M. L., et al Biochemistry 3D-Visualization Colocalization Abstract

Additional 21 Publications

2009 Publications